Accessible Workflow | imported: ATAC-Seq

Galaxy Workflow ' imported: ATAC-Seq'


StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Step 3: Input dataset
select at runtime
Step 4: Input dataset
select at runtime
Step 5: BAM filter
Output dataset 'output' from step 1
Not available.
Not available.
Not available.
Not available.
Not available.
Not available.
Not available.
-1
Not available.
Not available.
Not available.
Not available.
Not available.
select at runtime
select at runtime
Not available.
Not available.
chrM
Not available.
Step 6: Sort
Output dataset 'outfile' from step 5
Chromosomal coordinates
Step 7: MACS2 callpeak
Output dataset 'output1' from step 6
Output dataset 'output' from step 2
Not available.
Human (2,451,960,000)
300
q-value
0.05
Build the shifting model
Peaks as tabular file summits Scores in bedGraph files (--bdg)
Hide advanced options
Step 8: bed_to_bigwig
BAM
Output dataset 'output1' from step 6
Unavailable.
Not available.
Not available.
Step 9: Map Peaks to Known Genes
Output dataset 'output' from step 3
Output dataset 'output' from step 4
Output dataset 'output_narrowpeaks' from step 7
5500
2500
True
BED
True
Not available.
Step 10: Pieplots MACS
Output dataset 'peaksOutput' from step 9
Output dataset 'output_narrowpeaks' from step 7
Not available.