Accessible Workflow | imported: RNASeq_Step2_DESeq2

Galaxy Workflow ' imported: RNASeq_Step2_DESeq2'


StepAnnotation
Step 1: Input dataset
select at runtime
raw gene count files for samples in group1 (CTRL). This is the end output from the secondary analysis pipeline (output from HTSeq).
Step 2: Input dataset
select at runtime
Raw gene count files for samples in group 2 (diseased: e.g. ALS).This is the end output from the secondary analysis pipeline. (output from HTSeq).
Step 3: DESeq2
Factors
Factor 1
Condition
Factor levels
Factor level 1
CTRL
Output dataset 'output' from step 1
Factor level 2
<galaxy.tools.parameters.basic.RuntimeValue object at 0x7ff765553e50>
Output dataset 'output' from step 2
True
<galaxy.tools.parameters.basic.RuntimeValue object at 0x7ff7655f57d0>
parametric
<galaxy.tools.parameters.basic.RuntimeValue object at 0x7ff7684d1050>
Not available.
Not available.
This is a standard workflow for differential expression analysis with DESeq2. Input is the gene count files for samples in the two groups. Output is a differentially expressed gene list with other stats metrics and graphs.